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Sosnovski, KE; Braun, T; Amir, A; BenShoshan, M; Abbas-Egbariya, H; Ben-Yishay, R; Anafi, L; Avivi, C; Barshack, I; Denson, LA; Haberman, Y. Reduced LHFPL3-AS2 lncRNA expression is linked to altered epithelial polarity and proliferation, and to ileal ulceration in Crohn disease. Scientific Reports. 2023; 13:20513.

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Pelia, R; Venkateswaran, S; Matthews, JD; Haberman, Y; Cutler, DJ; Hyams, JS; Denson, LA; Kugathasan, S. Profiling non-coding RNA levels with clinical classifiers in pediatric Crohn's disease. BMC Medical Genomics. 2021; 14:194.

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Mo, A; Nagpal, S; Gettler, K; Haritunians, T; Giri, M; Haberman, Y; Karns, R; Prince, J; Arafat, D; Hsu, NY; Kugathasan, S; Cho, JH; Denson, LA; Gibson, G. Stratification of risk of progression to colectomy in ulcerative colitis via measured and predicted gene expression. The American Journal of Human Genetics. 2021; 108:1765-1779.

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Verburgt, C; Dunn, K; Bielawski, J; Otley, A; Heyman, M; Sunseri, W; Shouval, D; Levine, A; de Meij, T; Hyams, J; Denson, L; Kugathasan, S; Benninga, M; de Jonge, W; Van Limbergen, J. OP32 Stool microbiome communities predict remission in treatment-naïve Pediatric Crohn’s Disease patients. Journal of Crohn's and Colitis. 2021; 15:s030.

Hellmann, J; Etter, RK; Denson, LA; Minar, P; Hill, D; Dykes, DM; Rosen, MJ. Quality Improvement Methodology Optimizes Infliximab Levels in Pediatric Patients with Inflammatory Bowel Disease. Pediatric Quality and Safety. 2021; 6:e400.

Grasberger, H; Magis, AT; Sheng, E; Conomos, MP; Zhang, M; Garzotto, LS; Hou, G; Bishu, S; Nagao-Kitamoto, H; El-Zaatari, M; Kugathasan, S; Denson, LA; Omenn, GS; Kao, JY. DUOX2 variants associate with preclinical disturbances in microbiota-immune homeostasis and increased inflammatory bowel disease risk. The Journal of Clinical Investigation. 2021; 131.

Grasberger, H; Magis, A; Sheng, E; Conomos, MP; Zhang, M; Garzotto, LS; Hou, G; Bishu, S; Nagao-Kitamoto, H; El-Zaatari, M; Kugathasan, S; Denson, LA; Omenn, GS; Kao, JY. 502 ASSOCIATION OF DELETERIOUS DUOX2 VARIANTS WITH A PRECLINICAL HALLMARK OF DISTURBED MICROBIOTA-IMMUNE HOMEOSTASIS AND RISK OF INFLAMMATORY BOWEL DISEASE. Gastroenterology. 2021; 160:s-100.

Clarkston, K; Karns, R; Fox, SR; Walters, TD; Griffiths, AM; Mack, DR; Boyle, BM; Leleiko, NS; Markowitz, J; Rosh, JR; Haberman, Y; Hyams, JS; Denson, LA; Rosen, MJ. 423 TARGETED ASSESSMENT OF MUCOSAL IMMUNE GENE EXPRESSION PREDICTS CLINICAL OUTCOMES IN CHILDREN WITH ULCERATIVE COLITIS. Gastroenterology. 2021; 160:s-88-s-89.

Sosnovski, KE; BenShoshan, M; Braun, T; Saar, EG; Geiger, T; Barshack, I; Denson, LA; Haberman, Y. Su098 GATA6-AS1 LNCRNA EXPRESSION IS REDUCED IN INFLAMMATORY BOWEL DISEASE (IBD) EPITHELIA, WITH POTENTIAL IMPLICATIONS ON MITOCHONDRIAL GENES AND FUNCTIONS. Gastroenterology. 2021; 160:s-616-s-617.

Haberman, Y; Iqbal, NT; Ghandikota, S; Mallawaarachchi, I; Tzipi Braun, ; Dexheimer, PJ; Rahman, N; Hadar, R; Sadiq, K; Ahmad, Z; Jegga, AG; Moore, SR; Ali, SA; Denson, LA. Mucosal Genomics Implicate Lymphocyte Activation and Lipid Metabolism in Refractory Environmental Enteric Dysfunction. Gastroenterology. 2021; 160:2055-2071.e0.

Haberman, Y; Iqbal, NT; Ghandikota, S; Mallawaarachchi, I; Braun, T; Dexheimer, PJ; Rehman, NU; Hadar, R; Sadiq, K; Ahmad, Z; Jegga, A; Moore, S; Ali, A; Denson, LA. Su094 IMMUNE AND METABOLIC PATHOGENESIS OF ENVIRONMENTAL ENTERIC DYSFUNCTION IN CHILDHOOD UNDERNUTRITION: A BIRTH INCEPTION COHORT. Gastroenterology. 2021; 160:s-615.

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Whaley, KG; Xiong, Y; Karns, R; Hyams, JS; Kugathasan, S; Boyle, BM; Walters, TD; Kelsen, JR; Leleiko, NS; Shapiro, JM; Denson, LA; D'Haens, GR; Vinks, AA; Rosen, MJ. 727 ANTI-TNF PHARMACOKINETICS AND RESPONSE TO THERAPY IN PEDIATRIC ACUTE SEVERE ULCERATIVE COLITIS (THE ARCH STUDY). Gastroenterology. 2021; 160:s-145.

Lyles, JL; Mulgund, AA; Bauman, LE; Su, W; Fei, L; Chona, DL; Sharma, P; Etter, RK; Hellmann, J; Denson, LA; Minar, P; Dykes, DM; Rosen, MJ. Effect of a Practice-wide Anti-TNF Proactive Therapeutic Drug Monitoring Program on Outcomes in Pediatric Patients with Inflammatory Bowel Disease. Inflammatory Bowel Diseases. 2021; 27:482-492.

Short, SP; Pilat, JM; Barrett, CW; Reddy, VK; Haberman, Y; Hendren, JR; Marsh, BJ; Keating, CE; Motley, AK; Hill, KE; Denson, LA; Burk, RF; Rosen, MJ; Williams, CS. Colonic Epithelial-Derived Selenoprotein P Is the Source for Antioxidant-Mediated Protection in Colitis-Associated Cancer. Gastroenterology. 2021; 160:1694-1708.e3.

Somineni, HK; Nagpal, S; Venkateswaran, S; Cutler, DJ; Okou, DT; Haritunians, T; Simpson, CL; Begum, F; Datta, LW; Quiros, AJ; Gibson, G; McGovern, DP B; Brant, SR; Kugathasan, S. Whole-genome sequencing of African Americans implicates differential genetic architecture in inflammatory bowel disease. The American Journal of Human Genetics. 2021; 108:431-445.

Short, S; Pilat, J; Reddy, V; Haberman, Y; Hendren, J; Washington, M; Hyams, J; Denson, L; Rosen, M; Williams, C. COLON SPECIFIC ROLE FOR SELENOPROTEIN P IN COLITIS AND COLITIS-ASSOCIATED CARCINOMA. Gastroenterology. 2021; 160:s32-s33.

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Potdar, AA; Dube, S; Naito, T; Li, K; Botwin, G; Haritunians, T; Li, D; Casero, D; Yang, S; Bilsborough, J; Braun, J; Kugathasan, S; Stappenbeck, TS; McGovern, DP B. Altered Intestinal ACE2 Levels Are Associated With Inflammation, Severe Disease, and Response to Anti-Cytokine Therapy in Inflammatory Bowel Disease. Gastroenterology. 2021; 160:809-822.e7.

Haberman, Y; Minar, P; Karns, R; Dexheimer, PJ; Ghandikota, S; Tegge, S; Shapiro, D; Shuler, B; Venkateswaran, S; Braun, T; Hyams, JS; Kugathasan, S; Jegga, AG; Denson, LA. Mucosal Inflammatory and Wound Healing Gene Programs Reveal Targets for Stricturing Behavior in Pediatric Crohn's Disease. Journal of Crohn's and Colitis. 2021; 15:273-286.

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Short, S; Pilat, J; Reddy, V; Haberman, Y; Hendren, J; Washington, M; Hyams, J; Denson, L; Rosen, M; Williams, C. COLON SPECIFIC ROLE FOR SELENOPROTEIN P IN COLITIS AND COLITIS-ASSOCIATED CARCINOMA. Inflammatory Bowel Diseases. 2021; 27:s25.

Gray, WN; Wagoner, ST; Schaefer, MR; Reed, B; Morgan, P; Holbrook, E; Yacyshyn, B; MacKner, L; Young, M; Maddux, M; Saeed, SA; Denson, LA; Hommel, K. Transition to Adult IBD Care: A Pilot Multi-Site, Telehealth Hybrid Intervention. Journal of Pediatric Psychology. 2021; 46:1-11.

Niklinska-Schirtz, BJ; Venkateswaran, S; Anbazhagan, M; Kolachala, VL; Prince, J; Dodd, A; Chinnadurai, R; Gibson, G; Denson, LA; Cutler, DJ; Jegga, AG; Matthews, JD; Kugathasan, S. Ileal Derived Organoids From Crohn's Disease Patients Show Unique Transcriptomic and Secretomic Signatures. CMGH Cellular and Molecular Gastroenterology and Hepatology. 2021; 12:1267-1280.

Ungaro, RC; Hu, L; Ji, J; Nayar, S; Kugathasan, S; Denson, LA; Hyams, J; Dubinsky, MC; Sands, BE; Cho, JH. Machine learning identifies novel blood protein predictors of penetrating and stricturing complications in newly diagnosed paediatric Crohn's disease. Alimentary Pharmacology and Therapeutics. 2021; 53:281-290.

Uddin, J; Tomar, S; Sharma, A; Waggoner, L; Ganesan, V; Marella, S; Yang, Y; Noah, T; Vanoni, S; Patterson, A; Hoebe, K; Divanovic, S; Munitz, A; Hogan, SP. PIR-B Regulates CD4+ IL17a+ T-Cell Survival and Restricts T-Cell-Dependent Intestinal Inflammatory Responses. CMGH Cellular and Molecular Gastroenterology and Hepatology. 2021; 12:1479-1502.

Sali, R; Adewole, S; Ehsan, L; Denson, LA; Kelly, P; Amadi, BC; Holtz, L; Ali, SA; Moore, SR; Syed, S; Brown, DE. Hierarchical Deep Convolutional Neural Networks for Multi-category Diagnosis of Gastrointestinal Disorders on Histopathological Images. 2020 IEEE International Conference on Healthcare Informatics (ICHI). 2020; 00:1-6.

Lam, S; Singh, R; Dillman, JR; Trout, AT; Serai, SD; Sharma, D; Sheridan, R; Su, W; Fei, L; Karns, R; Squires, JE; Denson, LA; Hyams, JS; Miethke, AG. Serum Matrix Metalloproteinase 7 Is a Diagnostic Biomarker of Biliary Injury and Fibrosis in Pediatric Autoimmune Liver Disease. Hepatology Communications. 2020; 4:1680-1693.

Wu, S; Hashimoto-Hill, S; Woo, V; Eshleman, EM; Whitt, J; Engleman, L; Karns, R; Denson, LA; Haslam, DB; Alenghat, T. Microbiota-derived metabolite promotes HDAC3 activity in the gut. Nature. 2020; 586:108-112.

Abu-El-Haija, M; Hornung, L; Lin, TK; Nathan, JD; Thompson, T; Vitale, DS; Nasr, A; Husain, SZ; Denson, L. Drug induced pancreatitis is the leading known cause of first attack acute pancreatitis in children. Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.]. 2020; 20:1103-1108.

Mack, DR; Saul, B; Boyle, B; Griffiths, A; Sauer, C; Markowitz, J; LeLeiko, N; Keljo, D; Rosh, JR; Baker, SS; Thomas, SM; Denson, L; Hyams, J; Grp, PS. Analysis of Using the Total White Blood Cell Count to Define Severe New-onset Ulcerative Colitis in Children. Journal of Pediatric Gastroenterology and Nutrition. 2020; 71:354-360.

Plevinsky, JM; Denson, LA; Hellmann, J; Minar, P; Rosen, MJ; Hommel, KA. A Micro-longitudinal Approach to Measuring Medication Adherence in Pediatric Inflammatory Bowel Diseases. Journal of Pediatric Gastroenterology and Nutrition. 2020; 71:366-370.

Hellmann, J; Andersen, H; Fei, L; Linn, A; Bezold, R; Lake, K; Jackson, K; Meyer, D; Dirksing, K; Bonkowski, E; Ollberding, NJ; Haslam, DB; Denson, L. Microbial Shifts and Shorter Time to Bowel Resection Surgery Associated with C. difficile in Pediatric Crohn's Disease. Inflammatory Bowel Diseases. 2020; 26:1212-1221.

TA, A; Ollberding, N; Karns, R; Haberman, Y; Baldassano, RN; Markowitz, J; Heyman, M; Kirschner, BS; Oliva-Hemker, M; Pfefferkorn, MD; Hyams, JS; Kugathasan, S; Dillman, J; Denson, LA. 1162 BASELINE ILEAL LUMINAL NARROWING IS ASSOCIATED WITH SPECIFIC PRE-TREATMENT MUCOSAL GENE PROGRAMS AND MICROBIAL SHIFTS AND SUBSEQUENT LIKELIHOOD OF TRANSMURAL HEALING IN PEDIATRIC CROHN'S DISEASE. Gastroenterology. 2020; 158:s-234-s-235.

Minar, PP; Xiong, Y; Mizuno, T; Colman, RJ; Hyams, JS; Noe, JD; Boyle, BM; Chun, KY; Yang, JM; Tsai, YT; Jackson, K; Rosen, MJ; Denson, LA; Vinks, AA. 1160 REAL-WORLD PEDIATRIC INFLIXIMAB PHARMACOKINETIC MODEL VERIFIES CRITICAL NEED FOR PRECISION DOSING SOFTWARE. Gastroenterology. 2020; 158:s-233-s-234.

Short, SP; Reddy, VK; Hendren, JR; Haberman, Y; Pilat, JM; Marsh, BJ; Washington, K; Hyams, JS; Denson, LA; Rosen, MJ; Williams, CS. 1092 EPITHELIAL-DERIVED SELENOPROTEIN P ATTENUATES OXIDATIVE STRESS AND PROTECTS FROM COLITIS-ASSOCIATED CARCINOGENESIS. Gastroenterology. 2020; 158:s-212.

Hyams, JS; Walters, TD; Brimacombe, M; Mack, DR; Griffiths, AM; Boyle, BM; Leleiko, NS; Markowitz, J; Sauer, CG; Keljo, DJ; Kugathasan, S; Haberman, Y; Denson, LA. 1161 CLINICAL AND HOST BIOLOGICAL FACTORS CAN PREDICT COLECTOMY RISK IN CHILDREN NEWLY DIAGNOSED WITH ULCERATIVE COLITIS. Gastroenterology. 2020; 158:s-234.

Colman, RJ; Xiong, Y; Mizuno, T; Hyams, JS; Noe, JD; Boyle, BM; Chun, KY; Yang, JM; Rosen, MJ; Denson, LA; Vinks, AA; Minar, PP. 613 ANTIBODIES TO INFLIXIMAB ACCELERATE DRUG CLEARANCE WHILE INTENSIFICATION STRATEGIES REVERSE IMMUNOGENICITY AND RECAPTURE CLINICAL RESPONSE. Gastroenterology. 2020; 158:s-130-s-131.

Haberman, Y; Minar, PP; Karns, R; Dexheimer, PJ; Ghandikota, S; Tegge, S; Shapiro, D; Shuler, B; Venkateswaran, S; Braun, T; Hyams, JS; Kugathasan, S; Jegga, A; Denson, LA. 935 PRE-TREATMENT MUCOSAL INFLAMMATORY AND WOUND HEALING GENE PROGRAMS REVEAL MECHANISMS ASSOCIATED WITH FUTURE STRICTURING BEHAVIOR DURING FIVE YEAR FOLLOW-UP IN PEDIATRIC CROHN'S DISEASE. Gastroenterology. 2020; 158:s-187-s-188.

Sosnovski, KE; BenShoshan, M; Abbas-egbariya, H; Saar, EG; Efroni, G; Braun, T; Barshack, I; Denson, LA; Haberman, Y. Tu1293 EPITHELIAL LONG NON-CODING RNA REGULATE IN-CIS NEIGHBORING TRANSCRIPTION FACTORS AND EPITHELIAL FUNCTIONS ASSOCIATED WITH CROHN DISEASE PATHOGENESIS. Gastroenterology. 2020; 158:s-1046-s-1047.

Shapiro, JM; El-Serag, HB; Gandle, C; Peacock, C; Denson, LA; Fishman, LN; Hernaez, R; Hou, JK. Recommendations for Successful Transition of Adolescents With Inflammatory Bowel Diseases to Adult Care. Clinical Gastroenterology and Hepatology. 2020; 18:276-289.e2.

Short, S; Reddy, V; Hendren, J; Haberman, Y; Pilat, J; Marsh, B; Washington, M; Hyams, J; Denson, T; Rosen, M; Williams, C. P143 EPITHELIAL-DERIVED SELENOPROTEIN P PROTECTS FROM COLITIS-ASSOCIATED CARCINOGENESIS. Gastroenterology. 2020; 158:s47-s48.

Short, S; Reddy, V; Hendren, J; Haberman, Y; Pilat, J; Marsh, B; Washington, M; Hyams, J; Denson, T; Rosen, M; Williams, C. P143 EPITHELIAL-DERIVED SELENOPROTEIN P PROTECTS FROM COLITIS-ASSOCIATED CARCINOGENESIS. Inflammatory Bowel Diseases. 2020; 26:s30.

Haberman Ziv, Y; Loberman-Nachum, N; Katya, S; Di Segni, A; Efroni, G; Braun, T; BenShoshan, M; Shouval, D; Denson, LA; Amir, A; Unger, R; Weiss, B. OP06 Comparison between Crohn and coeliac diseases small intestine transcriptomics and microbial data define similarities and divergent pathways linked to pathogenesis. Journal of Crohn's and Colitis. 2020; 14:s006.

Haberman Ziv, Y; Minar, P; Karns, R; Dexheimer, P; Ghandikota, S; Tegge, S; Shapiro, D; Shuler, B; Venkateswaran, S; Braun, T; Hyams, J; Kugathasan, S; Jegga, A; Denson, L. DOP89 Pre-treatment mucosal inflammatory and wound healing gene programmes reveal mechanisms associated with future stricturing behaviour during 5-year follow-up in paediatric Crohn’s disease. Journal of Crohn's and Colitis. 2020; 14:s127.

Denson, LA. Mitochondrial Networks: A New Therapeutic Target in Colitis. CMGH Cellular and Molecular Gastroenterology and Hepatology. 2020; 10:426-427.