Current Projects
In collaboration with Dr. Hershey’s NIAID funded Asthma and Allergic Diseases Cooperative Research Centers U19 grant, we developed two custom SNP arrays to evaluate the role of genes related to the epithelium, immunity, the skin barrier, inflammation and oxidative stress in pediatric asthma, atopic dermatitis and allergic rhinitis. We then genotyped over 1500 cases and controls to assess the effects of skin-barrier related candidate genes and asthma development. We also utilized mechanistic and biologic plausibility of epistasis to investigate interactions between the candidate genes. We were able to replicate our findings of genetic interaction in asthma in a population where neither gene was independently associated with the disease, highlighting the importance of using biology to evaluate epistasis in genetic association studies and the value of looking at functionally related genes to identify those with clinical relevance. Our future projects will use these methods to examine epistasis in these and other functionally related genes and include additional allergic diseases as well as environmental exposures to evaluate gene-environment interactions.
Reprinted from Fig. 3 published in J Allergy Clin Immunol 2014 May 13. Biagini Myers JM, Martin LJ, Butsch Kovacic M, Mersha TB, He H, Pilipenko V, Lindsey MA, Ericksen MB, Bernstein DI, LeMasters GK, Lockey JE, Khurana Hershey GK. Epistasis between serine protease inhibitor Kazal-type 5 (SPINK5) and thymic stromal lymphopoietin (TSLP) genes contributes to childhood asthma. Copyright © 2014, Biagini Myers et al. with permissions from Elsevier.